I think you will have to put done the de and not water for a couple of days while it does its work and then water the beds and after the plants are somewhat dry use the de again.
Its not really the best way to go due to having to constantly reapply it and I am not sure how well it work.
I use it in my coops too but not in my garden. I am a beekeeper and I wouldn't put de in the garden, I have seen my bees climb all over a plant and even walk all over the soil in my beds so its not just the blossoms.
Have you thought of using BT instead? I think it will work much better for this type of situation and alot safer for the bees.